Research and Development

Regulatory Affairs
Agricultural Science

The Research and Development team at Agrolab is specialized in hyper-spectral imaging.

Our expertise

Germination count

To determine the viability of seeds, a germination test is often carried out/conducted. Hereby the percent of seeds that can germinate is calculated and used as a measure of seed health. Traditionally this process has been carried out by planting seeds and waiting for the seedlings to emerge, before being manually counted. This is very time consuming since 7 to 14 days are needed for the seedlings to emerge and the counting process is very labor intensive.

Using imaging techniques much of this process has been automated and improved. The seedlings can be counted just as the coleoptile, the first root, emerges from the shell. This cuts down incubation time to just 4 to 7 days. Additionally, the counting process is proceeding automatically, using a segmentation and subsequent calculation of different shape parameters, which is seed specific. When the shape of a seed differs sufficiently from its not-germinated state it is considered germinated. By using a machine count to calculate germination, the element of human error is removed, while images obtained provide evidence for correct assessment.

However, that is not all the imaging approach provides. The speed of which 50 percent of seeds have germinated, also known as the t50, is an important estimation of field emergence. By using a series of measurements early in the growth stage the exact t50 value can be calculated and used to compare otherwise similar seed lots, since the t50 value might be different.

Leaf disease

Precise quantification of leaf diseases is needed to determine the efficiency of fungicides. Usually the amount of rust is assessed by having investigators determine the infection level by experience and comparing the leaves with template images. This, however, allows for deviation between different investigators and different types of rust growth.

By acquiring a multispectral image of every infected leaf, the exact extent of infection can quickly be determined. Multispectral imaging is used to obtain the amount of light that is reflected at different wavelengths, from different parts of the leaf. In this case 19 images are acquired using VideometerLab, from 365 to 970 nm, and combined into a single image. Using a variant of Linear Discriminant Analysis (LDA), the correlation between the pixel values from the same location in each image is used to determine which pixels are infected by rust. This means that even the smallest colonies, down to just 0.0016 mm2, can be detected and counted towards the total amount of infection.

Chlorophyll measurement

Plant health is often measured by the amount of chlorophyll in the plant, by using a small device which compares the reflectance of light at two wavelengths. The measured area is typically under 1 cm2 and care must be taken to choose a leaf that represents the entire population. The advantage of this method is it being fast, portable and easy.

Sometimes, circumstances require a more precise approach, which is why a multispectral full leaf analysis has been developed at Agrolab. Using VideometerLab a multispectral image of the entire leaf is obtained, which contains all relevant wavelengths for chlorophyll measurement.

Additionally, the ratio of chlorophyll A/B can be compared by utilizing their different absorbance peaks at 660 and 645 nm, respectively. Changes to this ratio is an indication of plant stress either through lack of nutrients or light.

Images:

Visualization of chlorophyll content in oil seed rape, grown in low and high light conditions. Red color indicates high chlorophyll activity, while blue is little to none.

Lichen on roof

Growth of lichen on roof plates and shingles is an unpleasant sight and can be damaging over time. Multiple lichen removal products already exist or are being developed. A major hindrance in the development of these products is the difficulty in quantifying the amount of lichen precisely. Typically, the total amount of lichen is estimated from template images in a span of ±10%. Using imaging of the roof plate, the amount of uncovered roof, and overgrown roof can be precisely calculated, through different images techniques such as color thresholding and segmentation. In some cases, various types of lichen can be assessed to determine whether the treatment has a better effect against different types of lichen.

More information to follow

Emergence count

Plant emergence is counted early in fields or greenhouses and used as a measurement of vigor. The seedlings are counted manually, a task that is time consuming and only yields one type of measurement. By acquiring images of the field, the number of plants can be determined quickly and correctly – every time. Using computer software, the average size, green leaf area in percent and other important parameters can also be calculated, all based on a single image. This allows comparison of different seed lots or varieties and the ability to precisely track the emergence and growth of these.

 

Jesper Yngvesson
Jesper YngvessonBusiness Development Manager
+46 70 34 84 85
Martin Gejl
Martin GejlDirector
Rasmus Grønning
Rasmus GrønningResearch & Development